IL_8BGH_154

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_154 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1279

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8BGH|1|2|G|887
8BGH|1|2|G|888
8BGH|1|2|A|889
8BGH|1|2|G|890
8BGH|1|2|U|891
8BGH|1|2|A|892
8BGH|1|2|C|893
8BGH|1|2|G|894
*
8BGH|1|2|U|905
8BGH|1|2|A|906
8BGH|1|2|A|907
8BGH|1|2|A|908
8BGH|1|2|A|909
8BGH|1|2|C|910

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12