IL_8BGH_167

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_167 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1862

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8BGH|1|2|G|1124
8BGH|1|2|U|1125
8BGH|1|2|U|1126
8BGH|1|2|G|1127
8BGH|1|2|C|1128
*
8BGH|1|2|G|1144
8BGH|1|2|A|1145
8BGH|1|2|A|1146
8BGH|1|2|C|1147
8BGH|1|2|U|1148
8BGH|1|2|C|1149

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10