IL_8BGH_176

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8BGH|1|2|A|1492, 8BGH|1|2|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_176 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3094

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8BGH|1|2|C|1407
8BGH|1|2|A|1408
8BGH|1|2|C|1409
*
8BGH|1|2|G|1491
8BGH|1|2|A|1492
8BGH|1|2|A|1493
8BGH|1|2|G|1494

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain 3

mRNA

Chain p

30S ribosomal protein S12