3D structure

PDB id
8BGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
CUU*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BGH_181 not in the Motif Atlas
Geometric match to IL_3SZX_003
Geometric discrepancy: 0.1422
The information below is about IL_3SZX_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

8BGH|1|2|C|1443
8BGH|1|2|U|1444
8BGH|1|2|U|1445
*
8BGH|1|2|G|1457
8BGH|1|2|G|1458
8BGH|1|2|G|1459

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain M
50S ribosomal protein L19
Chain x
30S ribosomal protein S20

Coloring options:


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