IL_8BGH_181

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_181 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1422

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8BGH|1|2|C|1443
8BGH|1|2|U|1444
8BGH|1|2|U|1445
*
8BGH|1|2|G|1457
8BGH|1|2|G|1458
8BGH|1|2|G|1459

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain M

50S ribosomal protein L19

Chain x

30S ribosomal protein S20