IL_8BGH_189

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_189 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1458

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BGH|1|0|U|1851
8BGH|1|0|U|1852
8BGH|1|0|A|1853
8BGH|1|0|A|1854
8BGH|1|0|U|1855
8BGH|1|0|U|1856
8BGH|1|0|G|1857
8BGH|1|0|A|1858
8BGH|1|0|U|1859
8BGH|1|0|G|1860
*
8BGH|1|0|U|1882
8BGH|1|0|U|1883
8BGH|1|0|G|1884
8BGH|1|0|A|1885
8BGH|1|0|U|1886
8BGH|1|0|C|1887
8BGH|1|0|G|1888
8BGH|1|0|A|1889
8BGH|1|0|A|1890
8BGH|1|0|G|1891

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains