3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
8BH4|1|0|A|504, 8BH4|1|0|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_012 not in the Motif Atlas
Homologous match to IL_7RQB_014
Geometric discrepancy: 0.1211
The information below is about IL_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60992.6
Basepair signature
cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
Number of instances in this motif group
6

Unit IDs

8BH4|1|0|G|481
8BH4|1|0|A|482
8BH4|1|0|A|483
8BH4|1|0|C|484
*
8BH4|1|0|G|496
8BH4|1|0|A|497
8BH4|1|0|G|498
8BH4|1|0|U|499
8BH4|1|0|G|500
8BH4|1|0|A|501
8BH4|1|0|A|502
8BH4|1|0|A|503
8BH4|1|0|A|504
8BH4|1|0|A|505
8BH4|1|0|G|506
8BH4|1|0|A|507
8BH4|1|0|A|508
8BH4|1|0|C|509

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain P
50S ribosomal protein L22
Chain R
50S ribosomal protein L24

Coloring options:


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