3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
8BH4|1|0|G|801, 8BH4|1|0|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_017 not in the Motif Atlas
Geometric match to IL_5J7L_260
Geometric discrepancy: 0.1103
The information below is about IL_5J7L_260
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

8BH4|1|0|G|674
8BH4|1|0|A|675
8BH4|1|0|A|676
8BH4|1|0|A|677
8BH4|1|0|C|678
*
8BH4|1|0|G|799
8BH4|1|0|A|800
8BH4|1|0|G|801
8BH4|1|0|A|802
8BH4|1|0|U|803
8BH4|1|0|A|804
8BH4|1|0|G|805
8BH4|1|0|C|806

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain C
50S ribosomal protein L4
Chain I
50S ribosomal protein L15

Coloring options:


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