3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
8BH4|1|0|G|776, 8BH4|1|0|A|788, 8BH4|1|0|A|789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_022 not in the Motif Atlas
Geometric match to IL_5J7L_265
Geometric discrepancy: 0.0913
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8BH4|1|0|G|775
8BH4|1|0|G|776
8BH4|1|0|G|777
*
8BH4|1|0|C|787
8BH4|1|0|A|788
8BH4|1|0|A|789
8BH4|1|0|U|790
8BH4|1|0|C|791

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain A
50S ribosomal protein L2
Chain P
50S ribosomal protein L22
Chain c
50S ribosomal protein L34

Coloring options:


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