3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
8BH4|1|0|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_103 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.1039
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8BH4|1|0|G|2737
8BH4|1|0|A|2738
8BH4|1|0|U|2739
8BH4|1|0|A|2740
8BH4|1|0|A|2741
8BH4|1|0|G|2742
*
8BH4|1|0|C|2762
8BH4|1|0|G|2763
8BH4|1|0|A|2764
8BH4|1|0|A|2765
8BH4|1|0|A|2766
8BH4|1|0|C|2767

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain E
50S ribosomal protein L6
Chain G
50S ribosomal protein L13
Chain e
50S ribosomal protein L36

Coloring options:


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