IL_8BH4_124

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BH4|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_124 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3282

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BH4|1|2|G|147
8BH4|1|2|G|148
8BH4|1|2|A|149
8BH4|1|2|U|150
8BH4|1|2|A|151
8BH4|1|2|A|152
8BH4|1|2|C|153
*
8BH4|1|2|G|168
8BH4|1|2|C|169
8BH4|1|2|U|170
8BH4|1|2|A|171
8BH4|1|2|A|172
8BH4|1|2|U|173
8BH4|1|2|A|174
8BH4|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20