IL_8BH4_126

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8BH4|1|2|U|244, 8BH4|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_126 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1401

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8BH4|1|2|G|242
8BH4|1|2|A|243
8BH4|1|2|U|244
8BH4|1|2|U|245
8BH4|1|2|A|246
8BH4|1|2|G|247
*
8BH4|1|2|C|277
8BH4|1|2|G|278
8BH4|1|2|A|279
8BH4|1|2|C|280
8BH4|1|2|G|281
8BH4|1|2|A|282
8BH4|1|2|U|283
8BH4|1|2|C|284

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17