IL_8BH4_152

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_152 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.122

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8BH4|1|2|G|887
8BH4|1|2|G|888
8BH4|1|2|A|889
8BH4|1|2|G|890
8BH4|1|2|U|891
8BH4|1|2|A|892
8BH4|1|2|C|893
8BH4|1|2|G|894
*
8BH4|1|2|U|905
8BH4|1|2|A|906
8BH4|1|2|A|907
8BH4|1|2|A|908
8BH4|1|2|A|909
8BH4|1|2|C|910

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12