IL_8BH4_155

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8BH4|1|2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_155 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1891

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8BH4|1|2|G|933
8BH4|1|2|C|934
8BH4|1|2|A|935
*
8BH4|1|2|U|1380
8BH4|1|2|U|1381
8BH4|1|2|C|1382
8BH4|1|2|C|1383
8BH4|1|2|C|1384

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain k

30S ribosomal protein S7

Chain m

30S ribosomal protein S9