3D structure

PDB id
8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.62 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
8BH4|1|2|C|1400, 8BH4|1|2|A|1503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BH4_172 not in the Motif Atlas
Geometric match to IL_4V88_463
Geometric discrepancy: 0.1555
The information below is about IL_4V88_463
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

8BH4|1|2|C|1399
8BH4|1|2|C|1400
8BH4|1|2|G|1401
*
8BH4|1|2|C|1501
8BH4|1|2|A|1502
8BH4|1|2|A|1503
8BH4|1|2|G|1504

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain 3
mRNA
Chain 4
Transfer RNA; tRNA

Coloring options:


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