IL_8BH4_187

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1387

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BH4|1|0|U|1851
8BH4|1|0|U|1852
8BH4|1|0|A|1853
8BH4|1|0|A|1854
8BH4|1|0|U|1855
8BH4|1|0|U|1856
8BH4|1|0|G|1857
8BH4|1|0|A|1858
8BH4|1|0|U|1859
8BH4|1|0|G|1860
*
8BH4|1|0|U|1882
8BH4|1|0|U|1883
8BH4|1|0|G|1884
8BH4|1|0|A|1885
8BH4|1|0|U|1886
8BH4|1|0|C|1887
8BH4|1|0|G|1888
8BH4|1|0|A|1889
8BH4|1|0|A|1890
8BH4|1|0|G|1891

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains