IL_8BH6_018

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_018 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.307

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8BH6|1|a|U|417
8BH6|1|a|G|418
8BH6|1|a|A|419
8BH6|1|a|U|420
8BH6|1|a|G|421
8BH6|1|a|A|422
8BH6|1|a|A|423
8BH6|1|a|G|424
*
8BH6|1|a|C|435
8BH6|1|a|G|436
8BH6|1|a|U|437
8BH6|1|a|A|438
8BH6|1|a|A|439
8BH6|1|a|A|440
8BH6|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4