IL_8BH6_058

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8BH6|1|a|A|1505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_058 not in the Motif Atlas

Geometric match to IL_4P3U_001

Geometric discrepancy: 0.31

The information below is about IL_4P3U_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8BH6|1|a|C|1418
8BH6|1|a|A|1419
8BH6|1|a|C|1420
*
8BH6|1|a|G|1503
8BH6|1|a|A|1504
8BH6|1|a|A|1505
8BH6|1|a|G|1506

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12