IL_8BH7_017

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_017 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.3998

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8BH7|1|a|U|417
8BH7|1|a|G|418
8BH7|1|a|A|419
8BH7|1|a|U|420
8BH7|1|a|G|421
8BH7|1|a|A|422
8BH7|1|a|A|423
8BH7|1|a|G|424
*
8BH7|1|a|C|435
8BH7|1|a|G|436
8BH7|1|a|U|437
8BH7|1|a|A|438
8BH7|1|a|A|439
8BH7|1|a|A|440
8BH7|1|a|A|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4