IL_8BH7_057

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

CGAAA*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_057 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2279

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BH7|1|a|C|1270
8BH7|1|a|G|1271
8BH7|1|a|A|1272
8BH7|1|a|A|1273
8BH7|1|a|A|1274
*
8BH7|1|a|U|1283
8BH7|1|a|C|1284
8BH7|1|a|A|1285
8BH7|1|a|A|1286
8BH7|1|a|G|1287

Current chains

Chain a

16S ribosomal RNA

Nearby chains