IL_8BH7_061

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

CACC*GGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_061 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.5795

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8BH7|1|a|C|1420
8BH7|1|a|A|1421
8BH7|1|a|C|1422
8BH7|1|a|C|1423
*
8BH7|1|a|G|1500
8BH7|1|a|G|1501
8BH7|1|a|U|1502
8BH7|1|a|G|1503

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Ribosome maturation factor RimP