IL_8BH7_073

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

GU*AAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_073 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.277

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.3

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

8BH7|1|a|G|605
8BH7|1|a|U|606
*
8BH7|1|a|A|648
8BH7|1|a|A|649
8BH7|1|a|A|650
8BH7|1|a|C|651

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17