IL_8BHF_001

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_001 not in the Motif Atlas

Homologous match to IL_4WSM_380

Geometric discrepancy: 0.1705

The information below is about IL_4WSM_380

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|21|G|5
8BHF|1|21|G|6
8BHF|1|21|A|7
*
8BHF|1|21|U|66
8BHF|1|21|U|67
8BHF|1|21|C|68

Current chains

Chain 21

P-site tRNA

Nearby chains

Chain n1

CCR4-NOT transcription complex subunit 3

Chain r3

Ribosomal protein L10