IL_8BHF_019
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 8BHF|1|A2|G|409, 8BHF|1|A2|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_019 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1428
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8BHF|1|A2|G|387
8BHF|1|A2|A|388
8BHF|1|A2|A|389
8BHF|1|A2|C|390
*
8BHF|1|A2|G|401
8BHF|1|A2|A|402
8BHF|1|A2|G|403
8BHF|1|A2|U|404
8BHF|1|A2|U|405
8BHF|1|A2|C|406
8BHF|1|A2|A|407
8BHF|1|A2|A|408
8BHF|1|A2|G|409
8BHF|1|A2|A|410
8BHF|1|A2|G|411
8BHF|1|A2|G|412
8BHF|1|A2|G|413
8BHF|1|A2|C|414
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C1
- 60S ribosomal protein L17
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L1
- Ribosomal protein L26
- Chain Y1
- 60S ribosomal protein L39-like
Coloring options: