IL_8BHF_020
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_020 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0813
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BHF|1|A2|G|415
8BHF|1|A2|U|416
8BHF|1|A2|G|417
8BHF|1|A2|A|418
8BHF|1|A2|A|419
8BHF|1|A2|A|420
8BHF|1|A2|C|421
*
8BHF|1|C2|G|13
8BHF|1|C2|U|14
8BHF|1|C2|G|15
8BHF|1|C2|G|16
8BHF|1|C2|A|17
8BHF|1|C2|U|18
8BHF|1|C2|C|19
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain C1
- 60S ribosomal protein L17
- Chain R1
- Ribosomal protein L32
- Chain l3
- 60S ribosomal protein L4
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