IL_8BHF_021

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_021 not in the Motif Atlas

Geometric match to IL_4PHY_003

Geometric discrepancy: 0.3579

The information below is about IL_4PHY_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|G|443
8BHF|1|A2|G|444
8BHF|1|A2|U|445
8BHF|1|A2|C|446
*
8BHF|1|A2|G|1298
8BHF|1|A2|C|1299
8BHF|1|A2|U|1300
8BHF|1|A2|A|1301
8BHF|1|A2|C|1302

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain R1

Ribosomal protein L32

Chain S1

60S ribosomal protein L35a