IL_8BHF_023

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|C|697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_023 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.3213

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8BHF|1|A2|C|459
8BHF|1|A2|C|460
*
8BHF|1|A2|G|696
8BHF|1|A2|C|697
8BHF|1|A2|G|698

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain d1

60S ribosomal protein L28

Chain n3

60S ribosomal protein L6