IL_8BHF_024

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_024 not in the Motif Atlas

Geometric match to IL_3DIL_006

Geometric discrepancy: 0.1147

The information below is about IL_3DIL_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8BHF|1|A2|G|462
8BHF|1|A2|A|463
8BHF|1|A2|G|464
*
8BHF|1|A2|C|692
8BHF|1|A2|A|693
8BHF|1|A2|C|694

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain d1

60S ribosomal protein L28

Chain n3

60S ribosomal protein L6