IL_8BHF_032

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_032 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3906

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8BHF|1|A2|U|552
8BHF|1|A2|C|553
8BHF|1|A2|C|554
8BHF|1|A2|C|555
*
8BHF|1|A2|G|639
8BHF|1|A2|U|640
8BHF|1|A2|C|641
8BHF|1|A2|G|642

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain t3

60S ribosomal protein L13