IL_8BHF_033

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_033 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.264

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8BHF|1|A2|C|710
8BHF|1|A2|G|711
*
8BHF|1|A2|C|1284
8BHF|1|A2|G|1285
8BHF|1|A2|G|1286

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain S1

60S ribosomal protein L35a

Chain n3

60S ribosomal protein L6