IL_8BHF_034

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8BHF|1|A2|A|944, 8BHF|1|A2|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_034 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2764

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8BHF|1|A2|A|724
8BHF|1|A2|C|725
*
8BHF|1|A2|G|943
8BHF|1|A2|A|944
8BHF|1|A2|A|945
8BHF|1|A2|U|946

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L4

Chain o3

60S ribosomal protein L7