IL_8BHF_036

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

8BHF|1|A2|A|932, 8BHF|1|A2|G|936, 8BHF|1|A2|C|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|A|733
8BHF|1|A2|A|734
8BHF|1|A2|G|735
8BHF|1|A2|G|736
*
8BHF|1|A2|C|928
8BHF|1|A2|A|929
8BHF|1|A2|G|930
8BHF|1|A2|C|931
8BHF|1|A2|A|932
8BHF|1|A2|G|933
8BHF|1|A2|C|934
8BHF|1|A2|A|935
8BHF|1|A2|G|936
8BHF|1|A2|C|937
8BHF|1|A2|U|938

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

60S ribosomal protein L18a

Chain l3

60S ribosomal protein L4

Chain u3

60S ribosomal protein L14