IL_8BHF_041

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_041 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.194

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8BHF|1|A2|C|878
8BHF|1|A2|G|879
8BHF|1|A2|G|880
*
8BHF|1|A2|C|905
8BHF|1|A2|G|906

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

60S ribosomal protein L18a

Chain e1

60S acidic ribosomal protein P0

Chain q3

60S ribosomal protein L9

Chain u3

60S ribosomal protein L14