IL_8BHF_045
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGC*GGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_045 not in the Motif Atlas
- Geometric match to IL_3IVK_002
- Geometric discrepancy: 0.1917
- The information below is about IL_3IVK_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8BHF|1|A2|G|1072
8BHF|1|A2|G|1073
8BHF|1|A2|C|1074
*
8BHF|1|A2|G|1232
8BHF|1|A2|G|1233
8BHF|1|A2|C|1234
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain O1
- 60S ribosomal protein L29
- Chain l3
- 60S ribosomal protein L4
- Chain n3
- 60S ribosomal protein L6
- Chain o3
- 60S ribosomal protein L7
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