IL_8BHF_047

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8BHF|1|A2|C|1212, 8BHF|1|A2|C|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_047 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2292

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8BHF|1|A2|C|1080
8BHF|1|A2|U|1081
8BHF|1|A2|C|1082
*
8BHF|1|A2|G|1211
8BHF|1|A2|C|1212
8BHF|1|A2|C|1213
8BHF|1|A2|C|1214
8BHF|1|A2|G|1215

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain O1

60S ribosomal protein L29

Chain o3

60S ribosomal protein L7