IL_8BHF_052

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|1355
8BHF|1|A2|G|1356
8BHF|1|A2|G|1357
8BHF|1|A2|G|1358
*
8BHF|1|A2|C|1377
8BHF|1|A2|G|1378
8BHF|1|A2|U|1379
8BHF|1|A2|G|1380

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain N1

60S ribosomal protein L27a

Chain l3

60S ribosomal protein L4

Chain t3

60S ribosomal protein L13