IL_8BHF_056

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_056 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2083

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8BHF|1|A2|C|1431
8BHF|1|A2|G|1432
8BHF|1|A2|A|1433
8BHF|1|A2|G|1434
*
8BHF|1|A2|C|1450
8BHF|1|A2|G|1451
8BHF|1|A2|A|1452
8BHF|1|A2|G|1453

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D1

Ribosomal protein L18

Chain l3

60S ribosomal protein L4