IL_8BHF_061

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

8BHF|1|A2|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_061 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.2023

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8BHF|1|A2|G|1550
8BHF|1|A2|C|1551
*
8BHF|1|A2|G|1576
8BHF|1|A2|G|1577
8BHF|1|A2|U|1578

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain c1

60S ribosomal protein L37a

Chain j3

60S ribosomal protein L8