IL_8BHF_062

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_062 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1084

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8BHF|1|A2|C|1551
8BHF|1|A2|G|1552
8BHF|1|A2|A|1553
8BHF|1|A2|A|1554
8BHF|1|A2|G|1555
*
8BHF|1|A2|U|1572
8BHF|1|A2|G|1573
8BHF|1|A2|G|1574
8BHF|1|A2|A|1575
8BHF|1|A2|G|1576

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain c1

60S ribosomal protein L37a

Chain j3

60S ribosomal protein L8