IL_8BHF_064

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_064 not in the Motif Atlas

Homologous match to IL_8C3A_035

Geometric discrepancy: 0.0567

The information below is about IL_8C3A_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BHF|1|A2|C|1590
8BHF|1|A2|U|1591
8BHF|1|A2|G|1592
*
8BHF|1|A2|C|1603
8BHF|1|A2|G|1604

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain W1

Ribosomal protein L37

Chain k3

Ribosomal protein L3