IL_8BHF_081
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_081 not in the Motif Atlas
- Geometric match to IL_7RQB_037
- Geometric discrepancy: 0.1192
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
8BHF|1|A2|C|1911
8BHF|1|A2|G|1912
8BHF|1|A2|C|1913
8BHF|1|A2|C|1914
8BHF|1|A2|C|1915
8BHF|1|A2|G|1916
8BHF|1|A2|A|1917
8BHF|1|A2|U|1918
*
8BHF|1|A2|G|2064
8BHF|1|A2|G|2065
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain B1
- 60S ribosomal protein L13a
- Chain F1
- 60S ribosomal protein L18a
- Chain S1
- 60S ribosomal protein L35a
- Chain o3
- 60S ribosomal protein L7
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