IL_8BHF_089

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8BHF|1|A2|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_089 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2373

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8BHF|1|A2|G|2001
8BHF|1|A2|A|2002
8BHF|1|A2|G|2003
8BHF|1|A2|U|2004
8BHF|1|A2|G|2005
*
8BHF|1|A2|C|2014
8BHF|1|A2|U|2015
8BHF|1|A2|C|2016

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain e1

60S acidic ribosomal protein P0

Chain f1

60S ribosomal protein L12