IL_8BHF_090

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_090 not in the Motif Atlas

Geometric match to IL_4LFB_046

Geometric discrepancy: 0.1824

The information below is about IL_4LFB_046

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8BHF|1|A2|C|2083
8BHF|1|A2|U|2084
8BHF|1|A2|G|2085
*
8BHF|1|A2|C|2275
8BHF|1|A2|G|2276

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D1

Ribosomal protein L18

Chain R1

Ribosomal protein L32

Chain l3

60S ribosomal protein L4

Chain o3

60S ribosomal protein L7