IL_8BHF_092
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8BHF|1|A2|A|2303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_092 not in the Motif Atlas
- Homologous match to IL_8C3A_062
- Geometric discrepancy: 0.5336
- The information below is about IL_8C3A_062
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8BHF|1|A2|G|2302
8BHF|1|A2|A|2303
8BHF|1|A2|G|2304
*
8BHF|1|A2|C|2337
8BHF|1|A2|C|2338
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R1
- Ribosomal protein L32
- Chain d1
- 60S ribosomal protein L28
- Chain l3
- 60S ribosomal protein L4
Coloring options: