IL_8BHF_096

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

8BHF|1|A2|A|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_096 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.2274

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|U|2418
8BHF|1|A2|G|2419
8BHF|1|A2|A|2420
8BHF|1|A2|A|2421
8BHF|1|A2|C|2422
*
8BHF|1|A2|G|2430
8BHF|1|A2|A|2431
8BHF|1|A2|A|2432

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

60S ribosomal protein L17

Chain E1

Ribosomal protein L19

Chain Y1

60S ribosomal protein L39-like