IL_8BHF_098

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_098 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.2677

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8BHF|1|A2|A|2480
8BHF|1|A2|C|2481
8BHF|1|A2|G|2482
*
8BHF|1|A2|C|2502
8BHF|1|A2|U|2503

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain K1

Ribosomal protein L23/L25 N-terminal domain-containing protein