IL_8BHF_105

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

8BHF|1|A2|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_105 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2209

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

8BHF|1|A2|C|2649
8BHF|1|A2|A|2650
8BHF|1|A2|G|2651
*
8BHF|1|A2|C|2688
8BHF|1|A2|G|2689
8BHF|1|A2|U|2690
8BHF|1|A2|G|2691

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain T1

60S ribosomal protein L34