IL_8BHF_111

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_111 not in the Motif Atlas

Homologous match to IL_5TBW_076

Geometric discrepancy: 0.0926

The information below is about IL_5TBW_076

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8BHF|1|A2|G|2850
8BHF|1|A2|G|2851
8BHF|1|A2|A|2852
8BHF|1|A2|A|2853
*
8BHF|1|A2|U|3835
8BHF|1|A2|C|3836

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain I1

60S ribosomal protein L23

Chain k3

Ribosomal protein L3