IL_8BHF_116

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|A|3823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_116 not in the Motif Atlas

Homologous match to IL_8C3A_087

Geometric discrepancy: 0.1463

The information below is about IL_8C3A_087

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8BHF|1|A2|C|3627
8BHF|1|A2|C|3628
*
8BHF|1|A2|G|3822
8BHF|1|A2|A|3823
8BHF|1|A2|G|3824

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain a1

60S ribosomal protein L41