IL_8BHF_118

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8BHF|1|A2|C|3696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_118 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1206

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8BHF|1|A2|C|3695
8BHF|1|A2|C|3696
8BHF|1|A2|A|3697
8BHF|1|A2|G|3698
*
8BHF|1|A2|C|3744
8BHF|1|A2|G|3745

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain j3

60S ribosomal protein L8

Chain n1

CCR4-NOT transcription complex subunit 3