IL_8BHF_123

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_123 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.0802

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8BHF|1|A2|G|3775
8BHF|1|A2|C|3776
*
8BHF|1|A2|G|3806
8BHF|1|A2|C|3807
8BHF|1|A2|A|3808
8BHF|1|A2|U|3809

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain 21

Transfer RNA; tRNA

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain a1

60S ribosomal protein L41